Surface Energy Budget

gamma_linear_approx(time, temp, lambda_const, lambda_time_lag=None, lambda_nl=None, temp_anom_nl=None)

OUTDATED FUNCTION - USED FOR get_temp_fourier but now use get_temp_fourier_numerical

This approximates \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\) as:

\[\Gamma^{\uparrow} \approx \lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) + \sum_{j=2}^{j_{max}}\lambda_{nl_j}\left(T'^{j}(t) - \overline{T'^j}\right)\]

where:

• \(T' = T(t) - \overline{T}\) is the surface temperature anomaly
• \(LW^{\uparrow}\) is upward longwave radiation at the surface i.e. \(\sigma T^4\) or lwup_sfc output by Isca. Units: \(Wm^{-2}\).
• \(LW^{\downarrow}\) is downward longwave radiation at the surface i.e. lwdn_sfc output by Isca. Units: \(Wm^{-2}\).
• \(LH^{\uparrow}\) is the upward latent heat radiation at the surface i.e. flux_lhe output by Isca. Units: \(Wm^{-2}\).
• \(SH^{\uparrow}\) is the upward sensible heat radiation at the surface i.e. flux_t output by Isca. Units: \(Wm^{-2}\).

Parameters:

Name	Type	Description	Default
time	ndarray	float [n_time] Time in days (assumes periodic e.g. annual mean, so time = np.arange(360)).	required
temp	ndarray	float [n_time] Surface temperature, \(T\) for each day in time. Assumes periodic so temp[0] is the temperature at time time[-1]+1.	required
lambda_const	ndarray	float [n_lambda+1] The constants \(\lambda_i\) used in the approximation. lambda_const[0] is \(\lambda_0\) and lambda_const[i] is \(\lambda_{i}\) for \(i>0\).	required
lambda_time_lag	Optional[ndarray]	float [n_lambda] The constants \(\Lambda_i\) used in the approximation. lambda_time_lag[0] is \(\Lambda_1\) and lambda_time_lag[i] is \(\Lambda_{i+1}\) for \(i>0\).	None
lambda_nl	Optional[Union[float, ndarray]]	float [n_lambda_nl] The constants \(\lambda_{nl}\) used in the approximation. [0] is squared contribution, [1] is cubed, ...	None
temp_anom_nl	Optional[ndarray]	float [n_time] The value of \(T'(t)\) to use in the calculation of non-linear part: \(\sum_{j=2}^{j_{max}}\lambda_{nl_j}\left(T'^{j}(t) - \overline{T'^j}\right)\). If None, will compute from temp.	None

Returns:

Type	Description
ndarray	float [n_time] The approximation \(\Gamma^{\uparrow} \approx \lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) + \lambda_{sq}\left(T(t) - \overline{T}\right)^2\) with units of \(Wm^{-2}\).

Source code in isca_tools/thesis/surface_energy_budget.py

def gamma_linear_approx(time: np.ndarray, temp: np.ndarray,
                        lambda_const: np.ndarray, lambda_time_lag: Optional[np.ndarray] = None,
                        lambda_nl: Optional[Union[float, np.ndarray]] = None,
                        temp_anom_nl: Optional[np.ndarray] = None) -> np.ndarray:
    """
    OUTDATED FUNCTION - USED FOR `get_temp_fourier` but now use `get_temp_fourier_numerical`

    This approximates $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$ as:

    $$\Gamma^{\\uparrow} \\approx \lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) +
    \sum_{j=2}^{j_{max}}\lambda_{nl_j}\\left(T'^{j}(t) - \overline{T'^j}\\right)$$

    where:

    * $T' = T(t) - \overline{T}$ is the surface temperature anomaly
    * $LW^{\\uparrow}$ is upward longwave radiation at the surface i.e. $\\sigma T^4$ or `lwup_sfc` output by Isca.
        Units: $Wm^{-2}$.
    * $LW^{\\downarrow}$ is downward longwave radiation at the surface i.e. `lwdn_sfc` output by Isca.
        Units: $Wm^{-2}$.
    * $LH^{\\uparrow}$ is the upward latent heat radiation at the surface i.e. `flux_lhe` output by Isca.
        Units: $Wm^{-2}$.
    * $SH^{\\uparrow}$ is the upward sensible heat radiation at the surface i.e. `flux_t` output by Isca.
        Units: $Wm^{-2}$.

    Args:
        time: `float [n_time]`</br>
            Time in days (assumes periodic e.g. annual mean, so `time = np.arange(360)`).
        temp: `float [n_time]`</br>
            Surface temperature, $T$ for each day in `time`. Assumes periodic so `temp[0]` is the temperature
            at time `time[-1]+1`.
        lambda_const: `float [n_lambda+1]`</br>
            The constants $\lambda_i$ used in the approximation.</br>
            `lambda_const[0]` is $\lambda_0$ and `lambda_const[i]` is $\lambda_{i}$ for $i>0$.
        lambda_time_lag: `float [n_lambda]`</br>
            The constants $\Lambda_i$ used in the approximation.</br>
            `lambda_time_lag[0]` is $\Lambda_1$ and `lambda_time_lag[i]` is $\Lambda_{i+1}$ for $i>0$.
        lambda_nl: `float [n_lambda_nl]`
            The constants $\lambda_{nl}$ used in the approximation. `[0]` is squared contribution, `[1]` is cubed, ...
        temp_anom_nl: `float [n_time]`</br>
            The value of $T'(t)$ to use in the calculation of non-linear part:
            $\sum_{j=2}^{j_{max}}\lambda_{nl_j}\\left(T'^{j}(t) - \overline{T'^j}\\right)$.
            If `None`, will compute from `temp`.

    Returns:
        `float [n_time]`</br>
            The approximation $\Gamma^{\\uparrow} \\approx \lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i)
            + \lambda_{sq}\\left(T(t) - \overline{T}\\right)^2$ with units of $Wm^{-2}$.
    """
    if lambda_nl is not None:
        #  deal with case when float given as lambda_nl
        if not hasattr(lambda_nl, "__len__"):
            lambda_nl = np.asarray([lambda_nl])
    n_lambda = len(lambda_const) - 1
    if lambda_time_lag is None:
        lambda_temp = np.sum(lambda_const[1:]) * temp
    else:
        # To apply phase shift, need spline so can compute temp anomaly at times outside range in `time`.
        temp_spline_fit = CubicSpline(np.append(time, time[-1] + 1), np.append(temp, temp[0]),
                                      bc_type='periodic')
        lambda_temp = np.zeros_like(temp)
        for i in range(n_lambda):
            lambda_temp += lambda_const[1 + i] * temp_spline_fit(time - lambda_time_lag[i])
    gamma_nl = np.zeros_like(temp)
    if lambda_nl is not None:
        if temp_anom_nl is None:
            temp_anom_nl = temp - np.mean(temp)
        n_lambda_nl = len(lambda_nl)
        for j in range(n_lambda_nl):
            gamma_nl += lambda_nl[j] * (temp_anom_nl ** (j + 2) - np.mean(temp_anom_nl ** (j + 2)))
    return lambda_const[0] + lambda_temp + gamma_nl

get_param_dimensionless(var, heat_capacity=None, n_year_days=None, sw_fourier_amp1=None, sw_fourier_amp2=None, lambda_const=None, day_seconds=86400)

Returns dimensionless versions of empirical fitting parameter, without changing the sign. There are three possibilities for how var is made dimensionless:

• If provide heat_capacity, \(C\), and n_year_days, \(\mathcal{T}\), then will assume var is \(\lambda\) or \(\lambda_{phase}\). Will return \(\lambda' = \frac{\lambda}{2\pi fC}\) where \(f=1/\mathcal{T}\).
• If provide sw_fourier_amp1, \(F_1\), sw_fourier_amp2, \(F_2\), and lambda_const, \(\lambda\), then will assume var is \(\lambda_{sq}\). Will return \(\lambda_{sq}' = \frac{\lambda_{sq}F_1^2}{2\lambda^2F_2}\).
• If provide sw_fourier_amp2, \(F_2\), only then will assume var is \(\Lambda_{cos}\) or \(\Lambda_{sin}\): \(\Lambda_{cos}' = \Lambda_{cos}/F_2\).

Parameters:

Name	Type	Description	Default
var	Union[float, ndarray, DataArray]	Parameter to make dimensionless.	required
heat_capacity	Optional[Union[float, ndarray, DataArray]]	\(C\), the heat capacity of the surface in units of \(JK^{-1}m^{-2}\). Obtained from mixed layer depth of ocean using get_heat_capacity.	None
n_year_days	Optional[int]	Number of days in the year.	None
sw_fourier_amp1	Optional[Union[float, ndarray, DataArray]]	The first harmonic amplitude Fourier coefficient for shortwave radiation, \(F_1\).	None
sw_fourier_amp2	Optional[Union[float, ndarray, DataArray]]	The second harmonic amplitude Fourier coefficients for shortwave radiation, \(F_2\).	None
lambda_const	Optional[Union[float, ndarray, DataArray]]	The linear constant \(\lambda\) used in the approximation for \(\Gamma^{\uparrow}. In normal form with units of Wm\)^{-2}\(K\)^{-1}$.	None
day_seconds	float	Duration of a day in seconds.	86400

Returns:

Name	Type	Description
var_dim	Union[float, ndarray, DataArray]	Dimensionless version of var.

Source code in isca_tools/thesis/surface_energy_budget.py

def get_param_dimensionless(var: Union[float, np.ndarray, xr.DataArray],
                            heat_capacity: Optional[Union[float, np.ndarray, xr.DataArray]]=None,
                            n_year_days: Optional[int]=None,
                            sw_fourier_amp1: Optional[Union[float, np.ndarray, xr.DataArray]]=None,
                            sw_fourier_amp2: Optional[Union[float, np.ndarray, xr.DataArray]]=None,
                            lambda_const: Optional[Union[float, np.ndarray, xr.DataArray]]=None,
                            day_seconds: float = 86400
                            ) -> Union[float, np.ndarray, xr.DataArray]:
    """
    Returns dimensionless versions of empirical fitting parameter, without changing the sign.
    There are three possibilities for how `var` is made dimensionless:

    * If provide `heat_capacity`, $C$, and `n_year_days`, $\mathcal{T}$, then will assume `var` is $\lambda$ or
    $\lambda_{phase}$. Will return $\lambda' = \\frac{\lambda}{2\pi fC}$ where $f=1/\mathcal{T}$.
    * If provide `sw_fourier_amp1`, $F_1$, `sw_fourier_amp2`, $F_2$, and `lambda_const`, $\lambda$, then will
    assume `var` is $\lambda_{sq}$. Will return $\lambda_{sq}' = \\frac{\lambda_{sq}F_1^2}{2\lambda^2F_2}$.
    * If provide `sw_fourier_amp2`, $F_2$, only then will assume `var` is $\Lambda_{cos}$ or $\Lambda_{sin}$:
    $\Lambda_{cos}' = \Lambda_{cos}/F_2$.

    Args:
        var: Parameter to make dimensionless.
        heat_capacity: $C$, the heat capacity of the surface in units of $JK^{-1}m^{-2}$.</br>
            Obtained from mixed layer depth of ocean using
            [`get_heat_capacity`](../utils/radiation.md#isca_tools.utils.radiation.get_heat_capacity).
        n_year_days: Number of days in the year.
        sw_fourier_amp1: The first harmonic amplitude Fourier coefficient for shortwave radiation, $F_1$.
        sw_fourier_amp2: The second harmonic amplitude Fourier coefficients for shortwave radiation, $F_2$.
        lambda_const: The linear constant $\lambda$ used in the approximation for
            $\Gamma^{\\uparrow}. In normal form with units of Wm$^{-2}$K$^{-1}$.
        day_seconds: Duration of a day in seconds.

    Returns:
        var_dim: Dimensionless version of `var`.
    """
    # May be issue here with var changing sign, but don't think so as only negative is sw_fourier_amp1 and square that
    # But in southern hemisphere, may be different with sw_fourier_amp2
    if (heat_capacity is not None) and (n_year_days is not None):
        # lambda_phase or lambda_const
        f = 1/(n_year_days * day_seconds)
        var = var / (2*np.pi*f*heat_capacity)
    elif (sw_fourier_amp1 is not None) and (sw_fourier_amp2 is not None) and (lambda_const is not None):
        # lambda_sq
        var = var * sw_fourier_amp1**2 / (2 * lambda_const ** 2 * np.abs(sw_fourier_amp2))
    elif sw_fourier_amp2 is not None:
        # lambda_cos and lambda_sin
        var = var/np.abs(sw_fourier_amp2)
    else:
        raise ValueError("Combination of parameters provided not correct for any parameter")
    return var

get_temp_extrema_analytic(sw_fourier_amp1, heat_capacity, lambda_const, lambda_phase=0, lambda_sq=0, sw_fourier_amp2=0, n_year_days=360, day_seconds=86400)

This will return the analytic solution for the times and amplitudes of the extrema of the fourier solution of \(T'\) in the following form of the surface energy budget:

\[ C\frac{\partial T'}{\partial t} = F(t) - \lambda_0 - \lambda T'(t) - \lambda_{phase}T'(t-\mathcal{T}/4) - \lambda_{sq} T'^2(t) \]

Parameters:

Name	Type	Description	Default
sw_fourier_amp1	Union[float, ndarray]	float [n_regions] The first harmonic amplitude fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(F_1\).	required
heat_capacity	float	\(C\), the heat capacity of the surface in units of \(JK^{-1}m^{-2}\). Obtained from mixed layer depth of ocean using get_heat_capacity.	required
lambda_const	Union[float, ndarray]	The constant \(\lambda\) used in the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\).	required
lambda_phase	Union[float, ndarray]	The constants \(\lambda_{phase}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_sq	Union[float, ndarray]	The constant \(\lambda_{sq}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
sw_fourier_amp2	Union[float, ndarray]	float [n_regions] The second harmonic amplitude fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(F_1\).	0
n_year_days	int	Number of days in a year.	360
day_seconds	float	Duration of a day in seconds.	86400

Returns:

Name	Type	Description
time_extrema1	Union[float, ndarray]	Time in days of extrema to occur first
time_extrema2	Union[float, ndarray]	Time in days of extrema to occur last
amp_extrema1	Union[float, ndarray]	Absolute amplitude of extrema to occur first
amp_extrema2	Union[float, ndarray]	Absolute amplitude of extrema to occur last

Source code in isca_tools/thesis/surface_energy_budget.py

def get_temp_extrema_analytic(sw_fourier_amp1: Union[float, np.ndarray], heat_capacity: float,
                              lambda_const: Union[float, np.ndarray], lambda_phase: Union[float, np.ndarray] = 0,
                              lambda_sq: Union[float, np.ndarray] = 0, sw_fourier_amp2: Union[float, np.ndarray] = 0,
                              n_year_days: int = 360, day_seconds: float = 86400
                              ) -> Tuple[Union[float, np.ndarray], Union[float, np.ndarray], Union[float, np.ndarray],
Union[float, np.ndarray]]:
    """
    This will return the analytic solution for the times and amplitudes of the extrema of the fourier
    solution of $T'$ in the following form of the surface energy budget:

    $$
    C\\frac{\partial T'}{\partial t} = F(t) - \lambda_0 - \lambda T'(t) - \lambda_{phase}T'(t-\mathcal{T}/4) -
    \lambda_{sq} T'^2(t)
    $$

    Args:
        sw_fourier_amp1: `float [n_regions]`</br>
            The first harmonic amplitude fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $F_1$.
        heat_capacity: $C$, the heat capacity of the surface in units of $JK^{-1}m^{-2}$.</br>
            Obtained from mixed layer depth of ocean using
            [`get_heat_capacity`](../utils/radiation.md#isca_tools.utils.radiation.get_heat_capacity).
        lambda_const: The constant $\lambda$ used in the approximation for
            $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.</br>
        lambda_phase: The constants $\lambda_{phase}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_sq: The constant $\lambda_{sq}$ used in the approximation for $\Gamma^{\\uparrow}$.
        sw_fourier_amp2: `float [n_regions]`</br>
            The second harmonic amplitude fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $F_1$.
        n_year_days: Number of days in a year.
        day_seconds: Duration of a day in seconds.

    Returns:
        time_extrema1: Time in days of extrema to occur first
        time_extrema2: Time in days of extrema to occur last
        amp_extrema1: Absolute amplitude of extrema to occur first
        amp_extrema2: Absolute amplitude of extrema to occur last
    """
    f = 1 / (n_year_days * day_seconds)
    if sw_fourier_amp2 == 0:
        if lambda_sq != 0:
            raise ValueError('Cannot solve for non-zero lambda_sq with single harmonic - '
                             'get extrema numerically instead')
        tan_phase = (2 * np.pi * heat_capacity * f - lambda_phase) / lambda_const
        time_extrema1 = np.arctan(tan_phase) / (2 * np.pi) * n_year_days
        time_extrema2 = time_extrema1 + n_year_days / 2
        amp_extrema1 = np.abs(sw_fourier_amp1 / lambda_const) / (np.sqrt(1 + tan_phase ** 2))
        amp_extrema2 = amp_extrema1
    return time_extrema1, time_extrema2, amp_extrema1, amp_extrema2

get_temp_extrema_numerical(time, temp, smooth_window=1, smooth_method='convolve')

Given the temperature temp, this will return the times and amplitudes of the maxima and minima. The extrema will be returned in time order i.e. if minima occurs first, it will be returned first.

Parameters:

Name	Type	Description	Default
time	ndarray	float [n_time] Time in days (assumes periodic e.g. annual mean, so time = np.arange(360))	required
temp	ndarray	float [n_time] Value of temperature at each time. Again, assume periodic.	required
smooth_window	int	Number of time steps to use to smooth temp before finding extrema. Smaller equals more accurate fit. 1 is perfect fit.	1
smooth_method	str	convolve or spline If convolve, will smooth via convolution with window of length smooth_window. If spline, will fit a spline using every smooth_window values of time.	'convolve'

Returns:

Name	Type	Description
time_extrema1	float	Time in days of extrema to occur first
time_extrema2	float	Time in days of extrema to occur last
amp_extrema1	float	Absolute amplitude of extrema to occur first
amp_extrema2	float	Absolute amplitude of extrema to occur last

Source code in isca_tools/thesis/surface_energy_budget.py

def get_temp_extrema_numerical(time: np.ndarray, temp: np.ndarray, smooth_window: int = 1,
                               smooth_method: str = 'convolve') -> Tuple[float, float, float, float]:
    """
    Given the temperature `temp`, this will return the times and amplitudes of the maxima and minima. The extrema
    will be returned in time order i.e. if minima occurs first, it will be returned first.

    Args:
        time: `float [n_time]`</br>
            Time in days (assumes periodic e.g. annual mean, so `time = np.arange(360)`)
        temp: `float [n_time]`</br>
            Value of temperature at each time. Again, assume periodic.
        smooth_window: Number of time steps to use to smooth `temp` before finding extrema.
            Smaller equals more accurate fit. `1` is perfect fit.
        smooth_method: `convolve` or `spline`</br>
            If `convolve`, will smooth via convolution with window of length `smooth_window`.
            If `spline`, will fit a spline using every `smooth_window` values of `time`.

    Returns:
        time_extrema1: Time in days of extrema to occur first
        time_extrema2: Time in days of extrema to occur last
        amp_extrema1: Absolute amplitude of extrema to occur first
        amp_extrema2: Absolute amplitude of extrema to occur last
    """
    time_extrema = {}
    amp_extrema = {}
    for key in ['min', 'max']:
        var_use, spline_use = numerical.get_var_extrema_date(time, temp - np.mean(temp),
                                                             smooth_window=smooth_window, type=key, max_extrema=1,
                                                             smooth_method=smooth_method)
        time_extrema[key] = var_use[0]
        amp_extrema[key] = np.abs(spline_use(time_extrema[key]))
    # Put output in time order
    if time_extrema['min'] <= time_extrema['max']:
        return time_extrema['min'], time_extrema['max'], amp_extrema['min'], amp_extrema['max']
    else:
        return time_extrema['max'], time_extrema['min'], amp_extrema['max'], amp_extrema['min']

get_temp_fourier(time, swdn, heat_capacity, lambda_const, lambda_time_lag=None, lambda_nl=None, n_harmonics=2, include_sw_phase=False, numerical=False, day_seconds=86400, single_harmonic_nl=False, return_anomaly=True)

OUTDATED FUNCTION - NOW USE get_temp_fourier_analytical or get_temp_fourier_numerical

Seeks a fourier solution of the form \(T(t) = \frac{T_0}{2} + \sum_{n=1}^{N} T_n\cos(2n\pi ft - \phi_n)\) to the linearized surface energy budget of the general form:

\[ C\frac{\partial T}{\partial t} = F(t) - \lambda_0 - \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) - \sum_{j=2}^{j_{max}}\lambda_{nl_j}\left(T'^{j}(t) - \overline{T'^j}\right) \]

where:

• \(T' = T(t) - \overline{T}\) is the surface temperature anomaly
• \(C\) is the heat capacity of the surface
• \(\overline{T} = T_0/2\) is the mean temperature.
• \(F(t) = \frac{F_0}{2} + \sum_{n=1}^{N} F_n\cos(2n\pi ft - \varphi_n)\) is the Fourier representation of the downward shortwave radiation at the surface, \(SW^{\downarrow}\).
• \(\lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) + \sum_{j=2}^{j_{max}}\lambda_{nl_j}\left(T'^{j}(t) - \overline{T'^j}\right)\) is the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\)

The solution is exact if \(\lambda_{nl_j}=0 \forall j\) and has the form:

• \(T_0 = (F_0-2\lambda_0)/\sum_{i=1}^{N_{\lambda}}\lambda_i\)
• \(T_n = \frac{F_n \cos(\varphi_n)\sqrt{1+\tan^2\phi_n}}{ (2\pi nfC - \sum_i \lambda_i \sin \Phi_{ni})\tan\phi_n + \sum_i \lambda_i \cos \Phi_{ni}}\)
• \(\tan \phi_n = \frac{2\pi nfC + \tan \varphi_n \sum_i \lambda_i \cos \Phi_{ni} - \sum_i \lambda_i \sin \Phi_{ni}}{-2\pi nfC \tan \varphi_n + \sum_i \lambda_i \cos \Phi_{ni} - \tan \varphi_n \sum_i \lambda_i \sin \Phi_{ni}}\)
• \(\Phi_{ni} = 2\pi nf \Lambda_i\) (units of radians, whereas \(\Lambda_i\) is in units of time - days).

If \(\lambda_{nl_j}\neq 0\), an approximate numerical solution will be obtained, still of the Fourier form.

Parameters:

Name	Type	Description	Default
time	ndarray	float [n_time] Time in days (assumes periodic e.g. annual mean, so time = np.arange(360)).	required
swdn	ndarray	float [n_time] Downward shortwave radiation at the surface, \(SW^{\downarrow}\). I.e. swdn_sfc output by Isca. Units: \(Wm^{-2}\).	required
heat_capacity	float	\(C\), the heat capacity of the surface in units of \(JK^{-1}m^{-2}\). Obtained from mixed layer depth of ocean using get_heat_capacity.	required
lambda_const	ndarray	float [n_lambda+1] The constants \(\lambda_i\) used in the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\). lambda_const[0] is \(\lambda_0\) and lambda_const[i] is \(\lambda_{i}\) for \(i>0\).	required
lambda_time_lag	Optional[ndarray]	float [n_lambda] The constants \(\Lambda_i\) used in the approximation for \(\Gamma^{\uparrow}\). lambda_time_lag[0] is \(\Lambda_1\) and lambda_time_lag[i] is \(\Lambda_{i+1}\) for \(i>0\).	None
lambda_nl	Optional[Union[float, ndarray]]	float [n_lambda_nl] The constants \(\lambda_{nl}\) used in the approximation for \(\Gamma^{\uparrow}\). [0] is squared contribution, [1] is cubed, ...	None
n_harmonics	int	Number of harmonics to use to fit fourier series for both \(T(t)\) and \(F(t)\), \(N\).	2
include_sw_phase	bool	If False, will set all phase factors, \(\varphi_n=0\), in Fourier expansion of \(F(t)\). These phase factors are usually very small, and it makes the solution for \(T(t)\) more simple if they are set to 0, hence the option.	False
numerical	bool	If True, will compute solution for \(T(t)\) numerically using scipy.optimize.curve_fit rather than using the analytic solution. Will always return numerical solution if lambda_sq \(\neq 0\).	False
day_seconds	float	Duration of a day in seconds.	86400
single_harmonic_nl	bool	If True, the \(\lambda_{nl_j}T'^j\) terms in \(\Gamma^{\uparrow}\) will only use the first harmonic, not all harmonics.	False
return_anomaly	bool	If True, the first return variable, temp_fourier will be the temperature anomaly, i.e. it will not include \(T_0\).	True

Returns:

Name	Type	Description
temp_fourier	ndarray	float [n_time] The Fourier series solution that was found for surface temperature, \(T\).
temp_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for surface temperature: \(T_n\).
temp_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for surface temperature: \(\phi_n\).
sw_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(F_n\).
sw_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(\varphi_n\).

Source code in isca_tools/thesis/surface_energy_budget.py

def get_temp_fourier(time: np.ndarray, swdn: np.ndarray, heat_capacity: float,
                     lambda_const: np.ndarray, lambda_time_lag: Optional[np.ndarray] = None,
                     lambda_nl: Optional[Union[float, np.ndarray]] = None, n_harmonics: int = 2,
                     include_sw_phase: bool = False, numerical: bool = False,
                     day_seconds: float = 86400,
                     single_harmonic_nl: bool = False, return_anomaly: bool = True) -> Tuple[
    np.ndarray, np.ndarray, np.ndarray, np.ndarray, np.ndarray]:
    """
    OUTDATED FUNCTION - NOW USE `get_temp_fourier_analytical` or `get_temp_fourier_numerical`

    Seeks a fourier solution of the form $T(t) = \\frac{T_0}{2} + \\sum_{n=1}^{N} T_n\\cos(2n\\pi ft - \\phi_n)$
    to the linearized surface energy budget of the general form:

    $$
    C\\frac{\partial T}{\partial t} = F(t) - \lambda_0 - \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) -
    \sum_{j=2}^{j_{max}}\lambda_{nl_j}\\left(T'^{j}(t) - \overline{T'^j}\\right)
    $$

    where:

    * $T' = T(t) - \overline{T}$ is the surface temperature anomaly
    * $C$ is the heat capacity of the surface
    * $\overline{T} = T_0/2$ is the mean temperature.
    * $F(t) = \\frac{F_0}{2} + \\sum_{n=1}^{N} F_n\\cos(2n\\pi ft - \\varphi_n)$ is the Fourier representation
    of the downward shortwave radiation at the surface, $SW^{\downarrow}$.
    * $\lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) +
    \sum_{j=2}^{j_{max}}\lambda_{nl_j}\\left(T'^{j}(t) - \overline{T'^j}\\right)$ is the approximation for
    $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$

    The solution is exact if $\lambda_{nl_j}=0 \\forall j$ and has the form:

    * $T_0 = (F_0-2\lambda_0)/\sum_{i=1}^{N_{\lambda}}\lambda_i$
    * $T_n = \\frac{F_n \cos(\\varphi_n)\sqrt{1+\\tan^2\phi_n}}{
    (2\pi nfC - \sum_i \lambda_i \sin \Phi_{ni})\\tan\phi_n + \sum_i \lambda_i \cos \Phi_{ni}}$
    * $\\tan \phi_n = \\frac{2\pi nfC + \\tan \\varphi_n \sum_i \lambda_i \cos \Phi_{ni} -
    \sum_i \lambda_i \sin \Phi_{ni}}{-2\pi nfC \\tan \\varphi_n + \sum_i \lambda_i \cos \Phi_{ni} -
    \\tan \\varphi_n \sum_i \lambda_i \sin \Phi_{ni}}$
    * $\Phi_{ni} = 2\pi nf \Lambda_i$ (units of radians, whereas $\Lambda_i$ is in units of time - days).

    If $\lambda_{nl_j}\\neq 0$, an approximate numerical solution will be obtained, still of the Fourier form.

    Args:
        time: `float [n_time]`</br>
            Time in days (assumes periodic e.g. annual mean, so `time = np.arange(360)`).
        swdn: `float [n_time]`</br>
            Downward shortwave radiation at the surface, $SW^{\\downarrow}$. I.e. `swdn_sfc` output by Isca.
            Units: $Wm^{-2}$.
        heat_capacity: $C$, the heat capacity of the surface in units of $JK^{-1}m^{-2}$.</br>
            Obtained from mixed layer depth of ocean using
            [`get_heat_capacity`](../utils/radiation.md#isca_tools.utils.radiation.get_heat_capacity).
        lambda_const: `float [n_lambda+1]`</br>
            The constants $\lambda_i$ used in the approximation for
            $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.</br>
            `lambda_const[0]` is $\lambda_0$ and `lambda_const[i]` is $\lambda_{i}$ for $i>0$.
        lambda_time_lag: `float [n_lambda]`</br>
            The constants $\Lambda_i$ used in the approximation for $\Gamma^{\\uparrow}$.</br>
            `lambda_time_lag[0]` is $\Lambda_1$ and `lambda_time_lag[i]` is $\Lambda_{i+1}$ for $i>0$.
        lambda_nl: `float [n_lambda_nl]`
            The constants $\lambda_{nl}$ used in the approximation for $\Gamma^{\\uparrow}$.
            `[0]` is squared contribution, `[1]` is cubed, ...
        n_harmonics: Number of harmonics to use to fit fourier series for both $T(t)$ and $F(t)$, $N$.
        include_sw_phase: If `False`, will set all phase factors, $\\varphi_n=0$, in Fourier expansion of $F(t)$.</br>
            These phase factors are usually very small, and it makes the solution for $T(t)$ more simple if they
            are set to 0, hence the option.
        numerical: If `True`, will compute solution for $T(t)$ numerically using [`scipy.optimize.curve_fit`](
            https://docs.scipy.org/doc/scipy/reference/generated/scipy.optimize.curve_fit.html) rather than using the
            analytic solution. Will always return numerical solution if `lambda_sq` $\\neq 0$.
        day_seconds: Duration of a day in seconds.
        single_harmonic_nl: If `True`, the $\lambda_{nl_j}T'^j$ terms in $\Gamma^{\\uparrow}$ will only
            use the first harmonic, not all harmonics.
        return_anomaly: If `True`, the first return variable, `temp_fourier` will be
            the temperature anomaly, i.e. it will not include $T_0$.

    Returns:
        temp_fourier: `float [n_time]`</br>
            The Fourier series solution that was found for surface temperature, $T$.
        temp_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for surface temperature: $T_n$.
        temp_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for surface temperature: $\phi_n$.
        sw_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $F_n$.
        sw_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $\\varphi_n$.
    """
    if lambda_nl is not None:
        #  deal with case when float given as lambda_nl
        if not hasattr(lambda_nl, "__len__"):
            lambda_nl = np.asarray([lambda_nl])
    n_year_days = len(time)
    n_lambda = len(lambda_const) - 1
    if lambda_time_lag is None:
        lambda_time_lag = np.zeros(n_lambda)
    else:
        if len(lambda_time_lag) != n_lambda:
            raise ValueError(f'Size of lambda_time_lag should be {n_lambda} not {len(lambda_time_lag)}.')

    # Get fourier representation of SW radiation
    sw_fourier_amp, sw_fourier_phase = fourier.get_fourier_fit(time, swdn, n_harmonics)[1:]
    if not include_sw_phase:
        sw_fourier_phase = np.zeros(n_harmonics)
    sw_fourier = fourier.fourier_series(time, sw_fourier_amp, sw_fourier_phase)
    sw_tan = np.tan(sw_fourier_phase)
    sw_cos = np.cos(sw_fourier_phase)
    sw_sin = np.sin(sw_fourier_phase)
    f = 1 / (
            n_year_days * day_seconds)  # must have frequency in units of s^{-1} to deal with phase stuff in radians

    if numerical or (lambda_nl is not None and not single_harmonic_nl):
        if not numerical:
            warnings.warn('Analytic solution not possible with lambda_nl non zero and single_hamrmonic_nl=False')

        def fit_func(time_array, *args):
            fourier_amp_coef = np.asarray([args[i] for i in range(n_harmonics + 1)])
            fourier_phase_coef = np.asarray([args[i] for i in range(n_harmonics + 1, len(args))])
            return swdn_from_temp_fourier(time_array, fourier_amp_coef, fourier_phase_coef, heat_capacity, lambda_const,
                                          lambda_time_lag, lambda_nl, day_seconds, single_harmonic_nl)

        # force positive phase coefficient to match analytic solution
        bounds_lower = [-np.inf] * (n_harmonics + 1) + [0] * n_harmonics
        bounds_upper = [np.inf] * (n_harmonics + 1) + [2 * np.pi] * n_harmonics

        # Starting solution is 1 harmonic analytical solution
        p0 = np.zeros(2 * n_harmonics + 1)
        lambda_phase_const = lambda_time_lag * 2 * np.pi / n_year_days
        lambda_cos = np.sum(lambda_const[1:] * np.cos(lambda_phase_const))
        lambda_sin = np.sum(lambda_const[1:] * np.sin(lambda_phase_const))
        p0[0] = (sw_fourier_amp[0] - 2 * lambda_const[0]) / np.sum(lambda_const[1:])
        p0[n_harmonics + 1] = np.arctan(
            (2 * np.pi * f * heat_capacity + sw_tan[0] * lambda_cos - lambda_sin) / (
                    -2 * np.pi * f * heat_capacity * sw_tan[0] + lambda_cos - sw_tan[0] * lambda_sin))
        p0[1] = sw_fourier_amp[1] * sw_cos[0] / np.cos(p0[n_harmonics + 1]) / (
                (2 * np.pi * f * heat_capacity - lambda_sin) * np.tan(
            p0[n_harmonics + 1]) + lambda_cos)

        try:
            args_found = optimize.curve_fit(fit_func, time, sw_fourier, p0,
                                            bounds=(bounds_lower, bounds_upper))[0]
        except RuntimeError:
            warnings.warn('Hit Runtime Error, trying without bounds')
            args_found = optimize.curve_fit(fit_func, time, sw_fourier, p0)[0]
        temp_fourier_amp = args_found[:n_harmonics + 1]
        temp_fourier_phase = args_found[n_harmonics + 1:]
    else:
        temp_fourier_amp = np.zeros(n_harmonics + 1)
        temp_fourier_phase = np.zeros(n_harmonics)
        temp_fourier_amp[0] = (sw_fourier_amp[0] - 2 * lambda_const[0]) / np.sum(lambda_const[1:])

        for n in range(1, n_harmonics + 1):
            # convert lambda time lag from days to units of radians
            lambda_phase_const = lambda_time_lag * 2 * n * np.pi / n_year_days
            lambda_cos = np.sum(lambda_const[1:] * np.cos(lambda_phase_const))
            lambda_sin = np.sum(lambda_const[1:] * np.sin(lambda_phase_const))

            temp_fourier_phase[n - 1] = np.arctan(
                (2 * np.pi * n * f * heat_capacity + sw_tan[n - 1] * lambda_cos - lambda_sin) / (
                        -2 * np.pi * n * f * heat_capacity * sw_tan[n - 1] + lambda_cos - sw_tan[n - 1] * lambda_sin))
            temp_fourier_amp[n] = sw_fourier_amp[n] * sw_cos[n - 1] / np.cos(
                temp_fourier_phase[n - 1]) / (
                                          (2 * np.pi * n * f * heat_capacity - lambda_sin) * np.tan(
                                      temp_fourier_phase[n - 1]) + lambda_cos)
            if n == 1 and lambda_nl is not None and single_harmonic_nl:
                if len(lambda_nl) > 1:
                    raise ValueError(f'Analytic solution only possible with 1 not {len(lambda_nl)} non-linear terms')
                # Get analytic solution when include squared term in energy budget
                # Assuming squared term dominated by 1st harmonic
                sw_tan[1] = (sw_fourier_amp[2] * sw_sin[1] -
                             0.5 * lambda_nl[0] * temp_fourier_amp[1] ** 2 * np.sin(2 * temp_fourier_phase[0])) / (
                                    sw_fourier_amp[2] * sw_cos[1] -
                                    0.5 * lambda_nl[0] * temp_fourier_amp[1] ** 2 * np.cos(2 * temp_fourier_phase[0]))
                sw_cos[1] -= 0.5 * lambda_nl[0] * temp_fourier_amp[1] ** 2 * np.cos(2 * temp_fourier_phase[0]
                                                                                    ) / sw_fourier_amp[2]
    if return_anomaly:
        temp_fourier = fourier.fourier_series(time, np.append([0], temp_fourier_amp[1:]),
                                              temp_fourier_phase)
    else:
        temp_fourier = fourier.fourier_series(time, temp_fourier_amp, temp_fourier_phase)
    return temp_fourier, temp_fourier_amp, temp_fourier_phase, sw_fourier_amp, sw_fourier_phase

get_temp_fourier_analytic(time, swdn_sfc, heat_capacity, lambda_const, lambda_phase=0, lambda_sq=0, lambda_cos=0, lambda_sin=0, n_harmonics_sw=2, n_harmonics_temp=None, include_sw_phase=False, day_seconds=86400, pad_coefs_phase=False)

Seeks a fourier solution of the form \(T'(t) = \sum_{n=1}^{N} T_n\cos(2n\pi t/\mathcal{T} - \phi_n)\) to the surface energy budget of the general form:

\[ \begin{align} \begin{split} C\frac{\partial T'}{\partial t} = &F(t) - \lambda_0 - \frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) - \\ &\lambda T'^(t) - \lambda_{sq} T'^{2}(t) - \Lambda_{cos}\cos(4\pi t/\mathcal{T}) - \Lambda_{sin}\sin(4\pi t/\mathcal{T}) \end{split} \end{align} \]

where:

• \(T' = T(t) - \overline{T}\) is the surface temperature anomaly
• \(C\) is the heat capacity of the surface
• \(\overline{T} = T_0/2\) is the mean temperature.
• \(F(t) = \frac{F_0}{2} + \sum_{n=1}^{N} F_n\cos(2n\pi t/\mathcal{T} - \varphi_n)\) is the Fourier representation of the downward shortwave radiation at the surface, \(SW^{\downarrow}\).
• \(\lambda_0 + \lambda T' - \lambda_{sq} T'^{2} + \frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) +\)
  \(\Lambda_{cos}\cos(4\pi t/\mathcal{T}) + \Lambda_{sin}\sin(4\pi t/\mathcal{T})\) is the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\).
• \(\mathcal{T}\) is the period i.e. one year.

The solution is exact if \(\lambda_{sq}=0\) and has the form:

• \(T_0 = (F_0-2\lambda_0)/\sum_{i=1}^{N_{\lambda}}\lambda_i\)
• \(T_n = \frac{F_n \cos(\varphi_n)\sqrt{1+\tan^2\phi_n}}{ (2\pi nfC - \sum_i \lambda_i \sin \Phi_{ni})\tan\phi_n + \sum_i \lambda_i \cos \Phi_{ni}}\)
• \(\tan \phi_n = \frac{2\pi nfC + \tan \varphi_n \sum_i \lambda_i \cos \Phi_{ni} - \sum_i \lambda_i \sin \Phi_{ni}}{-2\pi nfC \tan \varphi_n + \sum_i \lambda_i \cos \Phi_{ni} - \tan \varphi_n \sum_i \lambda_i \sin \Phi_{ni}}\)
• \(i=1, 2\) with \(\lambda_1=\lambda\) and \(\lambda_2=\lambda_{phase}\).
• \(\Phi_{n1}=0\) and \(\Phi_{n2} = n\pi/2\) (from \(2n\pi / \mathcal{T} \times \mathcal{T}/4\)).

If \(\lambda_{sq}\neq 0\), an approximate analytical solution will be obtained, assuming \(T'^2(t) \approx (T_1\cos(2\pi ft - \phi_1))^2\).

Parameters:

Name	Type	Description	Default
time	ndarray	float [n_time] Time in days (assumes periodic e.g. annual mean, so time = np.arange(360)).	required
swdn_sfc	ndarray	float [n_time] Downward shortwave radiation at the surface, \(SW^{\downarrow}\). I.e. swdn_sfc output by Isca. Units: \(Wm^{-2}\).	required
heat_capacity	float	\(C\), the heat capacity of the surface in units of \(JK^{-1}m^{-2}\). Obtained from mixed layer depth of ocean using get_heat_capacity.	required
lambda_const	float	The constant \(\lambda\) used in the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\).	required
lambda_phase	float	The constants \(\lambda_{phase}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_sq	float	The constant \(\lambda_{sq}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_cos	float	The constant \(\Lambda_{cos}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_sin	float	The constant \(\Lambda_{sin}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
n_harmonics_sw	int	Number of harmonics to use to fit fourier series for \(SW^{\downarrow}\). Cannot exceed n_harmonics_temp as extra harmonics would not be used.	2
n_harmonics_temp	Optional[int]	Number, \(N\), of harmonics in fourier solution of temperature anomaly. If not given, will set to n_harmonics_sw.	None
include_sw_phase	bool	If False, will set all phase factors, \(\varphi_n=0\), in Fourier expansion of \(SW^{\downarrow}\). These phase factors are usually very small, and it makes the solution for \(T'(t)\) more simple if they are set to 0, hence the option.	False
day_seconds	float	Duration of a day in seconds.	86400
pad_coefs_phase	bool	If True, will set temp_fourier_phase and sw_fourier_phase to length n_harmonics+1 to match _fourier_amp, with the first value as zero. Otherwise, it will be size n_harmonics.	False

Returns:

Name	Type	Description
temp_fourier	ndarray	float [n_time] The Fourier series solution that was found for surface temperature, \(T\).
temp_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for surface temperature: \(T_n\).
temp_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for surface temperature: \(\phi_n\). If pad_coefs_phase, it will be of the length n_harmonics+1, with the first value as zero.
sw_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(F_n\).
sw_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(\varphi_n\). If pad_coefs_phase, it will be of the length n_harmonics+1, with the first value as zero.

Source code in isca_tools/thesis/surface_energy_budget.py

def get_temp_fourier_analytic(time: np.ndarray, swdn_sfc: np.ndarray, heat_capacity: float,
                              lambda_const: float, lambda_phase: float = 0,
                              lambda_sq: float = 0, lambda_cos: float = 0, lambda_sin: float = 0,
                              n_harmonics_sw: int = 2,
                              n_harmonics_temp: Optional[int] = None,
                              include_sw_phase: bool = False,
                              day_seconds: float = 86400, pad_coefs_phase: bool = False) -> Tuple[
    np.ndarray, np.ndarray, np.ndarray, np.ndarray, np.ndarray]:
    """
    Seeks a fourier solution of the form $T'(t) = \\sum_{n=1}^{N} T_n\\cos(2n\\pi t/\mathcal{T} - \\phi_n)$
    to the surface energy budget of the general form:

    $$
    \\begin{align}
    \\begin{split}
    C\\frac{\partial T'}{\partial t} = &F(t) - \lambda_0 -
    \\frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) -  \\\\
    &\lambda T'^(t) - \lambda_{sq} T'^{2}(t) - \Lambda_{cos}\\cos(4\\pi t/\mathcal{T}) -
    \Lambda_{sin}\\sin(4\\pi t/\mathcal{T})
    \\end{split}
    \\end{align}
    $$

    where:

    * $T' = T(t) - \overline{T}$ is the surface temperature anomaly
    * $C$ is the heat capacity of the surface
    * $\overline{T} = T_0/2$ is the mean temperature.
    * $F(t) = \\frac{F_0}{2} + \\sum_{n=1}^{N} F_n\\cos(2n\\pi t/\mathcal{T} - \\varphi_n)$ is the Fourier representation
    of the downward shortwave radiation at the surface, $SW^{\downarrow}$.
    * $\lambda_0 + \lambda T' - \lambda_{sq} T'^{2} +
    \\frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) +$</br>
    $\Lambda_{cos}\\cos(4\\pi t/\mathcal{T}) + \Lambda_{sin}\\sin(4\\pi t/\mathcal{T})$
    is the approximation for $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.
    * $\mathcal{T}$ is the period i.e. one year.

    The solution is exact if $\lambda_{sq}=0$ and has the form:

    * $T_0 = (F_0-2\lambda_0)/\sum_{i=1}^{N_{\lambda}}\lambda_i$
    * $T_n = \\frac{F_n \cos(\\varphi_n)\sqrt{1+\\tan^2\phi_n}}{
    (2\pi nfC - \sum_i \lambda_i \sin \Phi_{ni})\\tan\phi_n + \sum_i \lambda_i \cos \Phi_{ni}}$
    * $\\tan \phi_n = \\frac{2\pi nfC + \\tan \\varphi_n \sum_i \lambda_i \cos \Phi_{ni} -
    \sum_i \lambda_i \sin \Phi_{ni}}{-2\pi nfC \\tan \\varphi_n + \sum_i \lambda_i \cos \Phi_{ni} -
    \\tan \\varphi_n \sum_i \lambda_i \sin \Phi_{ni}}$
    * $i=1, 2$ with $\lambda_1=\lambda$ and $\lambda_2=\lambda_{phase}$.
    * $\Phi_{n1}=0$ and $\Phi_{n2} = n\pi/2$ (from $2n\pi / \mathcal{T} \\times \mathcal{T}/4$).

    If $\lambda_{sq}\\neq 0$, an approximate analytical solution will be obtained, assuming
    $T'^2(t) \\approx (T_1\\cos(2\\pi ft - \\phi_1))^2$.

    Args:
        time: `float [n_time]`</br>
            Time in days (assumes periodic e.g. annual mean, so `time = np.arange(360)`).
        swdn_sfc: `float [n_time]`</br>
            Downward shortwave radiation at the surface, $SW^{\\downarrow}$. I.e. `swdn_sfc` output by Isca.
            Units: $Wm^{-2}$.
        heat_capacity: $C$, the heat capacity of the surface in units of $JK^{-1}m^{-2}$.</br>
            Obtained from mixed layer depth of ocean using
            [`get_heat_capacity`](../utils/radiation.md#isca_tools.utils.radiation.get_heat_capacity).
        lambda_const: The constant $\lambda$ used in the approximation for
            $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.</br>
        lambda_phase: The constants $\lambda_{phase}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_sq: The constant $\lambda_{sq}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_cos: The constant $\Lambda_{cos}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_sin: The constant $\Lambda_{sin}$ used in the approximation for $\Gamma^{\\uparrow}$.
        n_harmonics_sw: Number of harmonics to use to fit fourier series for $SW^{\\downarrow}$.
            Cannot exceed `n_harmonics_temp` as extra harmonics would not be used.
        n_harmonics_temp: Number, $N$, of harmonics in fourier solution of temperature anomaly. If not given, will
            set to `n_harmonics_sw`.
        include_sw_phase: If `False`, will set all phase factors, $\\varphi_n=0$, in Fourier expansion of
            $SW^{\\downarrow}$.</br>
            These phase factors are usually very small, and it makes the solution for $T'(t)$ more simple if they
            are set to 0, hence the option.
        day_seconds: Duration of a day in seconds.
        pad_coefs_phase: If `True`, will set `temp_fourier_phase` and `sw_fourier_phase`
            to length `n_harmonics+1` to match `_fourier_amp`, with the first value as zero.
            Otherwise, it will be size `n_harmonics`.

    Returns:
        temp_fourier: `float [n_time]`</br>
            The Fourier series solution that was found for surface temperature, $T$.
        temp_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for surface temperature: $T_n$.
        temp_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for surface temperature: $\phi_n$.
            If `pad_coefs_phase`, it will be of the length `n_harmonics+1`, with the first value as zero.
        sw_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $F_n$.
        sw_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $\\varphi_n$.
            If `pad_coefs_phase`, it will be of the length `n_harmonics+1`, with the first value as zero.
    """
    n_year_days = len(time)
    if n_harmonics_temp is None:
        n_harmonics_temp = n_harmonics_sw

    if n_harmonics_temp == 1 and lambda_sq != 0:
        raise ValueError('Cannot solve for non-zero lambda_sq with single harmonic - '
                         'use get_temp_fourier_numerical instead')

    # Get fourier representation of SW radiation
    if n_harmonics_sw > n_harmonics_temp:
        raise ValueError('Cannot have more harmonics for swdn_sfc than have for temperature')
    sw_fourier_amp = np.zeros(n_harmonics_temp + 1)
    sw_fourier_phase = np.zeros(n_harmonics_temp)
    sw_fourier_amp[:n_harmonics_sw + 1], sw_fourier_phase[:n_harmonics_sw] = \
        fourier.get_fourier_fit(time, swdn_sfc, n_harmonics_sw)[1:]
    if not include_sw_phase:
        sw_fourier_phase = np.zeros(n_harmonics_temp)
    sw_tan = np.tan(sw_fourier_phase)
    sw_cos = np.cos(sw_fourier_phase)
    sw_sin = np.sin(sw_fourier_phase)
    if n_harmonics_temp >= 2:
        # For 2nd harmonic, have modification from cos and sin factors
        sw_cos[1] = (sw_fourier_amp[2] * sw_cos[1] - lambda_cos) / sw_fourier_amp[2]
        sw_sin[1] = (sw_fourier_amp[2] * sw_sin[1] - lambda_sin) / sw_fourier_amp[2]
        sw_tan[1] = sw_sin[1] / sw_cos[1]
    f = 1 / (n_year_days * day_seconds)  # must have frequency in units of s^{-1} to deal with phase stuff in radians

    temp_fourier_amp = np.zeros(n_harmonics_temp + 1)  # 1st component will remain 0 so mean of temperature is 0
    temp_fourier_phase = np.zeros(n_harmonics_temp)

    # 0.25 multiplier accounts for the phase delay i.e. shift of 90 days in 360 day year - same as in polyfit_phase
    phase_prefactor = 0.25
    for n in range(1, n_harmonics_temp + 1):
        lambda_term_cos = lambda_const
        lambda_term_sin = 0.5 * lambda_phase * (np.sin(phase_prefactor * 2 * n * np.pi) -
                                                np.sin(-phase_prefactor * 2 * n * np.pi))

        temp_fourier_phase[n - 1] = np.arctan(
            (2 * np.pi * n * f * heat_capacity + sw_tan[n - 1] * lambda_term_cos - lambda_term_sin) / (
                    -2 * np.pi * n * f * heat_capacity * sw_tan[n - 1] + lambda_term_cos - sw_tan[
                n - 1] * lambda_term_sin))
        temp_fourier_amp[n] = sw_fourier_amp[n] * sw_cos[n - 1] / np.cos(
            temp_fourier_phase[n - 1]) / (
                                      (2 * np.pi * n * f * heat_capacity - lambda_term_sin) * np.tan(
                                  temp_fourier_phase[n - 1]) + lambda_term_cos)

        if n == 1 and lambda_sq != 0:
            if include_sw_phase:
                raise ValueError('Solution not possible with sw phase and lambda_sq.')
            # Get analytic solution when include squared term in energy budget
            # Assuming squared term dominated by 1st harmonic
            sw_tan[1] = (sw_fourier_amp[2] * sw_sin[1] -
                         0.5 * lambda_sq * temp_fourier_amp[1] ** 2 * np.sin(2 * temp_fourier_phase[0])) / (
                                sw_fourier_amp[2] * sw_cos[1] -
                                0.5 * lambda_sq * temp_fourier_amp[1] ** 2 * np.cos(2 * temp_fourier_phase[0]))
            if sw_fourier_amp[2] == 0:
                sw_fourier_amp[2] = 1  # this term will cancel out, when do sw_fourier_amp[2]*sw_cos[1]
                # so is just so don't divide by zero below - exact number not important
            sw_cos[1] -= 0.5 * lambda_sq * temp_fourier_amp[1] ** 2 * np.cos(2 * temp_fourier_phase[0]
                                                                             ) / sw_fourier_amp[2]
    temp_fourier = fourier.fourier_series(time, temp_fourier_amp, temp_fourier_phase)
    if pad_coefs_phase:
        temp_fourier_phase = np.hstack((np.zeros(1), temp_fourier_phase))
        sw_fourier_phase = np.hstack((np.zeros(1), sw_fourier_phase))
    return temp_fourier, temp_fourier_amp, temp_fourier_phase, sw_fourier_amp, sw_fourier_phase

get_temp_fourier_analytic2(time, swdn_sfc, heat_capacity, lambda_const, lambda_phase=0, lambda_sq=0, lambda_cos=0, lambda_sin=0, lambda_0=None, n_harmonics=2, day_seconds=86400, pad_coefs_phase=False)

This is the same as get_temp_fourier_analytic but is constrained to only work with n_harmonics=1 and n_harmonics=2 and enforces include_sw_phase=False. Also, it is coded in a way to reflect the algebra more closely.

Seeks a fourier solution of the form \(T(t) = \frac{T_0}{2} + \sum_{n=1}^{2} T_n\cos(2n\pi t/\mathcal{T} - \phi_n)\) to the surface energy budget of the general form:

\[ \begin{align} \begin{split} C\frac{\partial T}{\partial t} = &F(t) - \lambda_0 - \frac{1}{2}\lambda_{phase}(T(t-\mathcal{T}/4) - T(t+\mathcal{T}/4)) - \\ &\lambda T(t) - \lambda_{sq} T'^{2}(t) - \Lambda_{cos}\cos(4\pi t/\mathcal{T}) - \Lambda_{sin}\sin(4\pi t/\mathcal{T}) \end{split} \end{align} \]

where:

• \(T' = T(t) - \overline{T}\) is the surface temperature anomaly
• \(C\) is the heat capacity of the surface
• \(\overline{T} = T_0/2\) is the mean temperature.
• \(F(t) = \frac{F_0}{2} + \sum_{n=1}^{N} F_n\cos(2n\pi t/\mathcal{T})\) is the Fourier representation of the downward shortwave radiation at the surface, \(SW^{\downarrow}\).
• \(\lambda_0 + \lambda T - \lambda_{sq} T'^{2} + \frac{1}{2}\lambda_{phase}(T(t-\mathcal{T}/4) - T(t+\mathcal{T}/4)) +\)
  \(\Lambda_{cos}\cos(4\pi t/\mathcal{T}) + \Lambda_{sin}\sin(4\pi t/\mathcal{T})\) is the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\).
• \(\mathcal{T}\) is the period i.e. one year.

The solution is exact if \(\lambda_{sq}=0\), and otherwise approximate assuming first harmonic dominates \(T'^2\) such that \(T'^2(t) \approx (T_1\cos(2\pi ft - \phi_1))^2 + T_2^2/2\):

• \(T_0 = (F_0-2\lambda_0)/\lambda - \frac{\lambda_{sq}}{\lambda}(T_1^2 + T_2^2)\)
• \(\tan \phi_1 = x(1 - \frac{\lambda_{phase}}{2\pi fC})\) where \(x=\frac{2\pi fC}{\lambda}\) and \(f=1/\mathcal{T}\).
• \(T_1 = \frac{F_1}{\lambda}\frac{1}{1+\tan^2\phi_1}\)
• \(\tan \phi_2 = 2x \frac{1-\frac{1}{2x}\frac{\alpha_2}{1-\alpha_1}}{1+2x\frac{\alpha_2}{1-\alpha_1}}\)
• \(T_2 = \frac{F_2(1-\Lambda_{cos}')}{\lambda}\frac{1+\tan^2\phi_2}{1+2x\tan\phi_2}(1-\alpha_1)\)

where we use the following dimensionless parameters:

• \(\Lambda_{cos}' = \Lambda_{cos}/F_2\)
• \(\Lambda_{sin}' = \Lambda_{sin}/F_2\)
• \(\lambda_{sq}' = \frac{\lambda_{sq}F_1^2}{2\lambda^2F_2}\)
• \(\alpha_1 = \frac{\lambda_{sq}'}{1-\Lambda_{cos}'}\frac{1-\tan^2(\phi_1)}{(1+\tan^2(\phi_1))^2}\)
• \(\alpha_2 = \frac{\Lambda_{sin}'}{1-\Lambda_{cos}'} + \frac{2\lambda_{sq}'}{1-\Lambda_{cos}'}\frac{\tan(\phi_1)}{(1+\tan^2(\phi_1))^2}\)

Parameters:

Name	Type	Description	Default
time	ndarray	float [n_time] Time in days (assumes periodic e.g. annual mean, so time = np.arange(360)).	required
swdn_sfc	ndarray	float [n_time] Downward shortwave radiation at the surface, \(SW^{\downarrow}\). I.e. swdn_sfc output by Isca. Units: \(Wm^{-2}\).	required
heat_capacity	float	\(C\), the heat capacity of the surface in units of \(JK^{-1}m^{-2}\). Obtained from mixed layer depth of ocean using get_heat_capacity.	required
lambda_const	float	The linear constant \(\lambda\) used in the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\).	required
lambda_phase	float	The constants \(\lambda_{phase}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_sq	float	The constant \(\lambda_{sq}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_cos	float	The constant \(\Lambda_{cos}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_sin	float	The constant \(\Lambda_{sin}\) used in the approximation for \(\Gamma^{\uparrow}\).	0
lambda_0	Optional[float]	The constant \(\lambda_0\) used in the approximation for \(\Gamma^{\uparrow}\). Leave as None to set \(T_0=0\) i.e., return the anomaly \(T_s-\overline{T}_s\).	None
n_harmonics	Literal[1, 2]	Number of harmonics to use to fit fourier series for \(SW^{\downarrow}\). Cannot exceed n_harmonics_temp as extra harmonics would not be used.	2
day_seconds	float	Duration of a day in seconds.	86400
pad_coefs_phase	bool	If True, will set temp_fourier_phase and sw_fourier_phase to length n_harmonics+1 to match _fourier_amp, with the first value as zero. Otherwise, it will be size n_harmonics.	False

Returns:

Name	Type	Description
temp_fourier	ndarray	float [n_time] The Fourier series solution that was found for surface temperature, \(T\).
temp_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for surface temperature: \(T_n\).
temp_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for surface temperature: \(\phi_n\). If pad_coefs_phase, it will be of the length n_harmonics+1, with the first value as zero.
sw_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(F_n\).
sw_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for shortwave radiation, \(SW^{\downarrow}\): \(\varphi_n\). If pad_coefs_phase, it will be of the length n_harmonics+1, with the first value as zero.

Source code in isca_tools/thesis/surface_energy_budget.py

def get_temp_fourier_analytic2(time: np.ndarray, swdn_sfc: np.ndarray, heat_capacity: float,
                               lambda_const: float, lambda_phase: float = 0,
                               lambda_sq: float = 0, lambda_cos: float = 0, lambda_sin: float = 0,
                               lambda_0: Optional[float] = None,
                               n_harmonics: Literal[1, 2] = 2,
                               day_seconds: float = 86400, pad_coefs_phase: bool = False) -> Tuple[
    np.ndarray, np.ndarray, np.ndarray, np.ndarray, np.ndarray]:
    """
    This is the same as `get_temp_fourier_analytic` but is constrained to only work with `n_harmonics=1` and
    `n_harmonics=2` and enforces `include_sw_phase=False`.
    Also, it is coded in a way to reflect the algebra more closely.

    Seeks a fourier solution of the form $T(t) = \\frac{T_0}{2} + \\sum_{n=1}^{2} T_n\\cos(2n\\pi t/\mathcal{T} - \\phi_n)$
    to the surface energy budget of the general form:

    $$
    \\begin{align}
    \\begin{split}
    C\\frac{\partial T}{\partial t} = &F(t) - \lambda_0 -
    \\frac{1}{2}\lambda_{phase}(T(t-\mathcal{T}/4) - T(t+\mathcal{T}/4)) -  \\\\
    &\lambda T(t) - \lambda_{sq} T'^{2}(t) - \Lambda_{cos}\\cos(4\\pi t/\mathcal{T}) -
    \Lambda_{sin}\\sin(4\\pi t/\mathcal{T})
    \\end{split}
    \\end{align}
    $$

    where:

    * $T' = T(t) - \overline{T}$ is the surface temperature anomaly
    * $C$ is the heat capacity of the surface
    * $\overline{T} = T_0/2$ is the mean temperature.
    * $F(t) = \\frac{F_0}{2} + \\sum_{n=1}^{N} F_n\\cos(2n\\pi t/\mathcal{T})$ is the Fourier representation
    of the downward shortwave radiation at the surface, $SW^{\downarrow}$.
    * $\lambda_0 + \lambda T - \lambda_{sq} T'^{2} +
    \\frac{1}{2}\lambda_{phase}(T(t-\mathcal{T}/4) - T(t+\mathcal{T}/4)) +$</br>
    $\Lambda_{cos}\\cos(4\\pi t/\mathcal{T}) + \Lambda_{sin}\\sin(4\\pi t/\mathcal{T})$
    is the approximation for $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.
    * $\mathcal{T}$ is the period i.e. one year.

    The solution is exact if $\lambda_{sq}=0$, and otherwise approximate assuming first harmonic dominates $T'^2$
    such that $T'^2(t) \\approx (T_1\\cos(2\\pi ft - \\phi_1))^2 + T_2^2/2$:

    * $T_0 = (F_0-2\lambda_0)/\lambda - \\frac{\lambda_{sq}}{\lambda}(T_1^2 + T_2^2)$
    * $\\tan \phi_1 = x(1 - \\frac{\lambda_{phase}}{2\pi fC})$ where $x=\\frac{2\pi fC}{\lambda}$ and $f=1/\mathcal{T}$.
    * $T_1 = \\frac{F_1}{\lambda}\\frac{1}{1+\\tan^2\phi_1}$
    * $\\tan \phi_2 = 2x \\frac{1-\\frac{1}{2x}\\frac{\\alpha_2}{1-\\alpha_1}}{1+2x\\frac{\\alpha_2}{1-\\alpha_1}}$
    * $T_2 = \\frac{F_2(1-\Lambda_{cos}')}{\lambda}\\frac{1+\\tan^2\phi_2}{1+2x\\tan\phi_2}(1-\\alpha_1)$

    where we use the following dimensionless parameters:

    * $\Lambda_{cos}' = \Lambda_{cos}/F_2$
    * $\Lambda_{sin}' = \Lambda_{sin}/F_2$
    * $\lambda_{sq}' = \\frac{\lambda_{sq}F_1^2}{2\lambda^2F_2}$
    * $\\alpha_1 = \\frac{\lambda_{sq}'}{1-\Lambda_{cos}'}\\frac{1-\\tan^2(\phi_1)}{(1+\\tan^2(\phi_1))^2}$
    * $\\alpha_2 = \\frac{\Lambda_{sin}'}{1-\Lambda_{cos}'} + \\frac{2\lambda_{sq}'}{1-\Lambda_{cos}'}\\frac{\\tan(\phi_1)}{(1+\\tan^2(\phi_1))^2}$

    Args:
        time: `float [n_time]`</br>
            Time in days (assumes periodic e.g. annual mean, so `time = np.arange(360)`).
        swdn_sfc: `float [n_time]`</br>
            Downward shortwave radiation at the surface, $SW^{\\downarrow}$. I.e. `swdn_sfc` output by Isca.
            Units: $Wm^{-2}$.
        heat_capacity: $C$, the heat capacity of the surface in units of $JK^{-1}m^{-2}$.</br>
            Obtained from mixed layer depth of ocean using
            [`get_heat_capacity`](../utils/radiation.md#isca_tools.utils.radiation.get_heat_capacity).
        lambda_const: The linear constant $\lambda$ used in the approximation for
            $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.</br>
        lambda_phase: The constants $\lambda_{phase}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_sq: The constant $\lambda_{sq}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_cos: The constant $\Lambda_{cos}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_sin: The constant $\Lambda_{sin}$ used in the approximation for $\Gamma^{\\uparrow}$.
        lambda_0: The constant $\lambda_0$ used in the approximation for $\Gamma^{\\uparrow}$.
            Leave as `None` to set $T_0=0$ i.e., return the anomaly $T_s-\overline{T}_s$.
        n_harmonics: Number of harmonics to use to fit fourier series for $SW^{\\downarrow}$.
            Cannot exceed `n_harmonics_temp` as extra harmonics would not be used.
        day_seconds: Duration of a day in seconds.
        pad_coefs_phase: If `True`, will set `temp_fourier_phase` and `sw_fourier_phase`
            to length `n_harmonics+1` to match `_fourier_amp`, with the first value as zero.
            Otherwise, it will be size `n_harmonics`.

    Returns:
        temp_fourier: `float [n_time]`</br>
            The Fourier series solution that was found for surface temperature, $T$.
        temp_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for surface temperature: $T_n$.
        temp_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for surface temperature: $\phi_n$.
            If `pad_coefs_phase`, it will be of the length `n_harmonics+1`, with the first value as zero.
        sw_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $F_n$.
        sw_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for shortwave radiation, $SW^{\\downarrow}$: $\\varphi_n$.
            If `pad_coefs_phase`, it will be of the length `n_harmonics+1`, with the first value as zero.
    """
    n_year_days = len(time)
    f = 1 / (n_year_days * day_seconds)  # must have frequency in units of s^{-1} to deal with phase stuff in radians

    if n_harmonics == 1 and lambda_sq != 0:
        raise ValueError('Cannot solve for non-zero lambda_sq with single harmonic - '
                         'use get_temp_fourier_numerical instead')
    # Get fourier representation of SW radiation. Note I force phase coefs to zero
    sw_fourier_amp = fourier.get_fourier_fit(time, swdn_sfc, n_harmonics)[1]

    temp_fourier_amp = np.zeros(n_harmonics + 1)  # 1st component will remain 0 so mean of temperature is 0
    temp_fourier_phase = np.zeros(n_harmonics + 1)

    # 1st Harmonic
    heat_cap_eff = heat_capacity * (1 - lambda_phase / (2 * np.pi * f * heat_capacity))
    x = 2 * np.pi * f * heat_capacity / lambda_const
    tan_phase1 = 2 * np.pi * f * heat_cap_eff / lambda_const
    temp_fourier_phase[1] = np.arctan(tan_phase1)
    temp_fourier_amp[1] = sw_fourier_amp[1] / lambda_const / np.sqrt(1 + tan_phase1 ** 2)

    # 2nd Harmonic - not exact if lambda_sq!=0, as approx T^2 given by first harmonic squared only
    if n_harmonics == 2:
        # Put empirical params in dimensionless form
        lambda_cos_dim = get_param_dimensionless(lambda_cos, sw_fourier_amp2=sw_fourier_amp[2]) * np.sign(sw_fourier_amp[2])
        lambda_sin_dim = get_param_dimensionless(lambda_sin, sw_fourier_amp2=sw_fourier_amp[2]) * np.sign(sw_fourier_amp[2])
        lambda_sq_dim = get_param_dimensionless(lambda_sq, sw_fourier_amp1=sw_fourier_amp[1],
                                                sw_fourier_amp2=sw_fourier_amp[2], lambda_const=lambda_const) * np.sign(sw_fourier_amp[2])

        # Combine to form other dimensionless factors
        alpha_1 = lambda_sq_dim / (1 - lambda_cos_dim) * (1 - tan_phase1 ** 2) / (1 + tan_phase1 ** 2) ** 2
        alpha_2 = lambda_sin_dim / (1 - lambda_cos_dim) + 2 * lambda_sq_dim / (1 - lambda_cos_dim) * tan_phase1 / (
                1 + tan_phase1 ** 2) ** 2
        phase_mod_factor = (1 - 1 / 2 / x * alpha_2 / (1 - alpha_1)) / (1 + 2 * x * (alpha_2 / (1 - alpha_1)))
        amp_mod_factor = (1 - lambda_cos_dim) * (1 - alpha_1)

        # Combine usual phase and amp factors with modification factors
        tan_phase2 = 2 * x * phase_mod_factor
        temp_fourier_phase[2] = np.arctan(tan_phase2)
        temp_fourier_amp[2] = sw_fourier_amp[2] / lambda_const * np.sqrt(1 + tan_phase2 ** 2) / (
                    1 + 2 * x * tan_phase2) * amp_mod_factor

        # sw_amp2_eff = sw_fourier_amp[2]-lambda_cos
        # lambda_sin_eff = lambda_sin/sw_amp2_eff
        # lambda_sq_eff = lambda_sq/2 * temp_fourier_amp[1]**2 / (2*sw_amp2_eff)
        # alpha_1 = lambda_sq_eff * (1-x**2)/(1+x**2)
        # alpha_2 = lambda_sin_eff + 2 * lambda_sq_eff * x/(1+x**2)
        # phase_mod_factor = (1-lambda_const/(4*np.pi*f*heat_capacity)*(alpha_2/(1-alpha_1)))/(
        #         1+4*np.pi*f*heat_capacity/lambda_const*(alpha_2/(1-alpha_1)))
        # x2 = phase_mod_factor * 4*np.pi*f*heat_capacity/lambda_const        # tan of phase_2
        # temp_fourier_phase[2] = np.arctan(x2)
        # temp_fourier_amp[2] = sw_amp2_eff * np.sqrt(1+x2**2) / (lambda_const + 4*np.pi*f*heat_capacity*x2) * (1-alpha_1)

    # 0th Harmonic
    if lambda_0 is not None:
        temp_fourier_amp[0] = (sw_fourier_amp[0] - 2 * lambda_0) / lambda_const
        if n_harmonics == 2:
            # If include squared term, then get an extra contribution to T_0
            temp_fourier_amp[0] -= lambda_sq / lambda_const * (temp_fourier_amp[1] ** 2 + temp_fourier_amp[2] ** 2)

    temp_fourier = fourier.fourier_series(time, temp_fourier_amp, temp_fourier_phase, pad_coefs_phase=True)
    if not pad_coefs_phase:
        temp_fourier_phase = temp_fourier_phase[1:]
    sw_fourier_phase = np.zeros_like(temp_fourier_phase)
    return temp_fourier, temp_fourier_amp, temp_fourier_phase, sw_fourier_amp, sw_fourier_phase

get_temp_fourier_numerical(time, temp_anom, gamma, swdn_sfc, heat_capacity, n_harmonics_sw=2, n_harmonics_temp=None, deg_gamma_fit=8, phase_gamma_fit=True, resample=False, gamma_fourier_term=False, include_sw_phase=False, day_seconds=86400)

This uses scipy.optimize.curve_fit to numerically seek a fourier solution of the form \(T'(t) = \sum_{n=1}^{N} T_n\cos(2n\pi t/\mathcal{T} - \phi_n)\) to the linearized surface energy budget of the general form:

\[ \begin{align} \begin{split} C\frac{\partial T'}{\partial t} = &SW^{\downarrow}(t) - \lambda_0 - \frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) - \\ &\sum_{j=1}^{N_{\Gamma}}\lambda_j T'^{j}(t) - \sum_{n=2}^N (\Lambda_{n, cos}\cos(2n\pi t/\mathcal{T}) + \Lambda_{n, sin}\sin(2n\pi t/\mathcal{T})) \end{split} \end{align} \]

where:

• \(T' = T(t) - \overline{T}\) is the surface temperature anomaly
• \(C\) is the heat capacity of the surface
• \(\overline{T} = T_0/2\) is the mean temperature.
• \(SW^{\downarrow}\) is the downward shortwave radiation at the surface, \(SW^{\downarrow}\).
• \(\lambda_0 + \frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) + \sum_{j=1}^{N_{\Gamma}}\lambda_j T'^{j}(t) +\)
  \(\sum_{n=2}^N (\Lambda_{n, cos}\cos(2n\pi t/\mathcal{T}) + \Lambda_{n, sin}\sin(2n\pi t/\mathcal{T}))\) is the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\).
• \(\mathcal{T}\) is the period i.e. one year.

Parameters:

Name	Type	Description	Default
time	ndarray	float [n_time] Time in days (assumes periodic e.g. annual mean, so time = np.arange(360)).	required
temp_anom	ndarray	float [n_time] Surface temperature anomaly, \(T'(t)\), for each day in time. Used for approximating \(\Gamma^{\uparrow}\). Assumes periodic so temp[0] is the temperature at time step immediately after time[-1].	required
gamma	ndarray	float [n_time] Simulated value of \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\) where \(LW\) is longwave, \(LH\) is latent heat and \(SH\) is sensible heat. Units: \(Wm^{-2}\).	required
swdn_sfc	ndarray	float [n_time] Downward shortwave radiation at the surface. Units: \(Wm^{-2}\).	required
heat_capacity	float	\(C\), the heat capacity of the surface in units of \(JK^{-1}m^{-2}\). Obtained from mixed layer depth of ocean using get_heat_capacity.	required
n_harmonics_sw	int	Number of harmonics to use to fit fourier series for \(SW^{\downarrow}\). Cannot exceed n_harmonics_temp as extra harmonics would not be used. Set to None, to use no approximation for \(SW^{\downarrow}\) - but we weary with comparing to analytic solution in this case.	2
n_harmonics_temp	Optional[int]	Number, \(N\), of harmonics in fourier solution of temperature anomaly. If not given, will set to n_harmonics_sw.	None
deg_gamma_fit	int	Power, \(N_{\Gamma}\), to go up to in polyomial approximation of \(\Gamma^{\uparrow}\) seeked.	8
phase_gamma_fit	bool	If False will set \(\lambda_{phase}=0\). Otherwise, will use polyfit_phase to estimate it.	True
resample	bool	If True, will use resample_data to make data evenly spaced in \(x\) before calling np.polyfit, when obtaining \(\Gamma\) coefficients.	False
gamma_fourier_term	bool	Whether to fit the Fourier contribution \(\sum_{n=2}^N (\Lambda_{n, cos}\cos(2n\pi t/\mathcal{T}) + \Lambda_{n, sin}\sin(2n\pi t/\mathcal{T}))\) to \(\Gamma^{\uparrow}\) with fourier_harmonics=np.arange(2, n_harmonics+1) in polyfit_phase. Idea behind this is to account for contribution of \(\Gamma^{\uparrow}\) that is not temperature dependent.	False
include_sw_phase	bool	If False, will set all phase factors, \(\varphi_n=0\), in Fourier expansion of \(SW^{\downarrow}\). These phase factors are usually very small, and it makes the analytic solution for \(T'(t)\) more simple if they are set to 0, hence the option. Only use if n_harmonics_sw not None.	False
day_seconds	float	Duration of a day in seconds.	86400

Returns:

Name	Type	Description
	ndarray	temp_fourier float [n_time] The Fourier series solution that was found for surface temperature anomaly. Units: \(K\).
temp_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for surface temperature: \(T_n\).
temp_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for surface temperature: \(\phi_n\).

Source code in isca_tools/thesis/surface_energy_budget.py

def get_temp_fourier_numerical(time: np.ndarray, temp_anom: np.ndarray, gamma: np.ndarray,
                               swdn_sfc: np.ndarray, heat_capacity: float,
                               n_harmonics_sw: int = 2, n_harmonics_temp: Optional[int] = None,
                               deg_gamma_fit: int = 8, phase_gamma_fit: bool = True,
                               resample: bool = False,
                               gamma_fourier_term: bool = False,
                               include_sw_phase: bool = False,
                               day_seconds: float = 86400) -> Tuple[np.ndarray, np.ndarray, np.ndarray]:
    """
    This uses [`scipy.optimize.curve_fit`](
    https://docs.scipy.org/doc/scipy/reference/generated/scipy.optimize.curve_fit.html) to numerically seek
    a fourier solution of the form $T'(t) = \\sum_{n=1}^{N} T_n\\cos(2n\\pi t/\mathcal{T} - \\phi_n)$
    to the linearized surface energy budget of the general form:

    $$
    \\begin{align}
    \\begin{split}
    C\\frac{\partial T'}{\partial t} = &SW^{\\downarrow}(t) - \lambda_0 -
    \\frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) -  \\\\
    &\\sum_{j=1}^{N_{\Gamma}}\lambda_j T'^{j}(t) - \\sum_{n=2}^N (\Lambda_{n, cos}\\cos(2n\\pi t/\mathcal{T}) +
    \Lambda_{n, sin}\\sin(2n\\pi t/\mathcal{T}))
    \\end{split}
    \\end{align}
    $$

    where:

    * $T' = T(t) - \overline{T}$ is the surface temperature anomaly
    * $C$ is the heat capacity of the surface
    * $\overline{T} = T_0/2$ is the mean temperature.
    * $SW^{\downarrow}$ is the downward shortwave radiation at the surface, $SW^{\downarrow}$.
    * $\lambda_0 + \\frac{1}{2}\lambda_{phase}(T'(t-\mathcal{T}/4) - T'(t+\mathcal{T}/4)) +
    \\sum_{j=1}^{N_{\Gamma}}\lambda_j T'^{j}(t) +$</br>
    $\\sum_{n=2}^N (\Lambda_{n, cos}\\cos(2n\\pi t/\mathcal{T}) + \Lambda_{n, sin}\\sin(2n\\pi t/\mathcal{T}))$
    is the approximation for $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.
    * $\mathcal{T}$ is the period i.e. one year.


    Args:
        time: `float [n_time]`</br>
            Time in days (assumes periodic e.g. annual mean, so `time = np.arange(360)`).
        temp_anom: `float [n_time]`</br>
            Surface temperature anomaly, $T'(t)$, for each day in `time`. Used for approximating
            $\Gamma^{\\uparrow}$.</br>
            Assumes periodic so temp[0] is the temperature at time step immediately after `time[-1]`.
        gamma: `float [n_time]`</br>
            Simulated value of $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$
            where $LW$ is longwave, $LH$ is latent heat and $SH$ is sensible heat.</br>
            Units: $Wm^{-2}$.
        swdn_sfc: `float [n_time]`</br>
            Downward shortwave radiation at the surface.</br>
            Units: $Wm^{-2}$.
        heat_capacity: $C$, the heat capacity of the surface in units of $JK^{-1}m^{-2}$.</br>
            Obtained from mixed layer depth of ocean using
            [`get_heat_capacity`](../utils/radiation.md#isca_tools.utils.radiation.get_heat_capacity).
        n_harmonics_sw: Number of harmonics to use to fit fourier series for $SW^{\\downarrow}$.
            Cannot exceed `n_harmonics_temp` as extra harmonics would not be used.</n>
            Set to None, to use no approximation for $SW^{\\downarrow}$ - but we weary with comparing to analytic
            solution in this case.
        n_harmonics_temp: Number, $N$, of harmonics in fourier solution of temperature anomaly. If not given, will
            set to `n_harmonics_sw`.
        deg_gamma_fit: Power, $N_{\Gamma}$, to go up to in polyomial approximation of $\Gamma^{\\uparrow}$ seeked.
        phase_gamma_fit: If `False` will set $\lambda_{phase}=0$.
            Otherwise, will use [`polyfit_phase`](../utils/numerical.md#isca_tools.utils.numerical.polyfit_phase)
            to estimate it.
        resample: If `True`, will use [`resample_data`](../utils/numerical.md#isca_tools.utils.numerical.resample_data)
            to make data evenly spaced in $x$ before calling `np.polyfit`, when obtaining $\Gamma$ coefficients.
        gamma_fourier_term: Whether to fit the Fourier contribution
            $\\sum_{n=2}^N (\Lambda_{n, cos}\\cos(2n\\pi t/\mathcal{T}) + \Lambda_{n, sin}\\sin(2n\\pi t/\mathcal{T}))$
             to $\Gamma^{\\uparrow}$ with `fourier_harmonics=np.arange(2, n_harmonics+1)` in
            [`polyfit_phase`](../utils/numerical.md#isca_tools.utils.numerical.polyfit_phase). Idea behind this
            is to account for contribution of $\Gamma^{\\uparrow}$ that is not temperature dependent.
        include_sw_phase: If `False`, will set all phase factors, $\\varphi_n=0$, in Fourier expansion of
            $SW^{\\downarrow}$.</br>
            These phase factors are usually very small, and it makes the analytic solution for $T'(t)$ more simple
            if they are set to 0, hence the option. Only use if `n_harmonics_sw` not `None`.
        day_seconds: Duration of a day in seconds.

    Returns:
        temp_fourier `float [n_time]`</br>
            The Fourier series solution that was found for surface temperature anomaly.</br>
            Units: $K$.
        temp_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for surface temperature: $T_n$.
        temp_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for surface temperature: $\phi_n$.
    """
    if n_harmonics_temp is None:
        n_harmonics_temp = n_harmonics_sw
    if gamma_fourier_term and phase_gamma_fit:
        gamma_approx_coefs, gamma_fourier_term_coefs_amp, gamma_fourier_term_coefs_phase = \
            numerical.polyfit_phase(temp_anom, gamma, deg_gamma_fit, resample=resample,
                                    include_phase=phase_gamma_fit, fourier_harmonics=np.arange(2, n_harmonics_temp + 1))
    else:
        gamma_approx_coefs = numerical.polyfit_phase(temp_anom, gamma, deg_gamma_fit, resample=resample,
                                                     include_phase=phase_gamma_fit)
        gamma_fourier_term_coefs_amp = None
        gamma_fourier_term_coefs_phase = None

    def fit_func(time_array, *args):
        # first n_harmonic values in args are the temperature amplitude coefficients (excluding T_0)
        # last n_harmonic values in args are the temperature phase coefficients
        fourier_amp_coef = np.asarray([args[i] for i in range(n_harmonics_temp)])
        # make first coefficient 0 so gives anomaly
        fourier_amp_coef = np.append([0], fourier_amp_coef)
        fourier_phase_coef = np.asarray([args[i] for i in range(n_harmonics_temp, len(args))])
        temp_anom_fourier = fourier.fourier_series(time_array, fourier_amp_coef, fourier_phase_coef)
        dtemp_dt_fourier = fourier.fourier_series_deriv(time_array, fourier_amp_coef,
                                                        fourier_phase_coef, day_seconds)
        if phase_gamma_fit:
            gamma_approx = numerical.polyval_phase(gamma_approx_coefs, temp_anom_fourier,
                                                   coefs_fourier_amp=gamma_fourier_term_coefs_amp,
                                                   coefs_fourier_phase=gamma_fourier_term_coefs_phase)
        else:
            gamma_approx = np.polyval(gamma_approx_coefs, temp_anom_fourier)
        return heat_capacity * dtemp_dt_fourier + gamma_approx

    # Starting guess is linear 1 harmonic linear analytical solution given gamma=lambda_const_guess*temp
    # so only 1st harmonic coefficients of amplitude and phase are needed, rest are set to zero
    p0 = np.zeros(2 * n_harmonics_temp)
    f = 1 / (time.size * day_seconds)
    p0[n_harmonics_temp] = np.arctan((2 * np.pi * f * heat_capacity) / gamma_approx_coefs[-2])
    if n_harmonics_sw is None:
        sw_fourier_amp = fourier.get_fourier_fit(time, swdn_sfc, 1)[1]
        # find temperature solution which minimises error to full insolation, no fourier approx
        sw_fourier_fit = swdn_sfc
    else:
        if include_sw_phase:
            sw_fourier_fit, sw_fourier_amp = fourier.get_fourier_fit(time, swdn_sfc, n_harmonics_sw)[:2]
        else:
            sw_fourier_amp, sw_fourier_phase = fourier.get_fourier_fit(time, swdn_sfc, n_harmonics_sw)[1:]
            sw_fourier_fit = fourier.fourier_series(time, sw_fourier_amp, sw_fourier_phase * 0)
    p0[0] = sw_fourier_amp[1] / np.cos(p0[n_harmonics_temp]) / (
            (2 * np.pi * f * heat_capacity) * np.tan(p0[n_harmonics_temp]) + gamma_approx_coefs[-2])
    args_found = optimize.curve_fit(fit_func, time, sw_fourier_fit, p0)[0]
    temp_fourier_amp = np.append([0], args_found[:n_harmonics_temp])
    temp_fourier_phase = args_found[n_harmonics_temp:]
    return fourier.fourier_series(time, temp_fourier_amp, temp_fourier_phase), temp_fourier_amp, temp_fourier_phase

phase_coef_conversion(coef_linear, coef_phase, to_time=True, pos_amp=False, neg_amp=False, take_linear_sign=True)

Method to convert between interpretation of phase empirical coefficients. If to_time=True, expect input to be \(\lambda\) and \(\lambda_{ph}\), and will return \(\lambda_{mod}\), and \(2\pi ft_{ph}\). If to_time=False, expect the opposite.

Conversion performed according to:

\[\begin{align} \lambda &= \lambda_{\text{mod}}\cos(2 \pi ft_{\text{ph}}) \\ \lambda_{\text{ph}} &= \lambda_{\text{mod}}\sin(2 \pi ft_{\text{ph}}) \end{align}\]

Parameters:

Name	Type	Description	Default
coef_linear	Union[float, ndarray, DataArray]	Cosine/linear-amplitude coefficient associated with the in-phase component. If to_time=True this is interpreted as \(\lambda\); if to_time=False this is interpreted as \(\lambda_{\mathrm{mod}}\). Can be a scalar, numpy.ndarray, or xarray.DataArray.	required
coef_phase	Union[float, ndarray, DataArray]	Phase-related coefficient. If to_time=True this is interpreted as \(\lambda_{\mathrm{ph}}\) (sine coefficient); if to_time=False this is interpreted as the phase angle \(2\pi f t_{\mathrm{ph}}\) (radians) used inside \(\cos(\cdot)\) / \(\sin(\cdot)\). Can be a scalar, numpy.ndarray, or xarray.DataArray.	required
to_time	bool	Direction of conversion. If True, convert \((\lambda,\lambda_{\mathrm{ph}})\rightarrow (\lambda_{\mathrm{mod}},2\pi f t_{\mathrm{ph}})\). If False, convert \((\lambda_{\mathrm{mod}},2\pi f t_{\mathrm{ph}}) \rightarrow (\lambda,\lambda_{\mathrm{ph}})\).	True
pos_amp	bool	Only makes a difference if to_time=True. If pos_amp=True: amp_coef >= 0, phase in (\([-pi, pi]\) (via atan2). If pos_amp=False: allow signed amp_coef and shift phase by +/-pi so that phase is constrained to \([-pi/2, pi/2]\) (minimize |phase|).	False
neg_amp	bool	Force amplitude to be negative.	False
take_linear_sign	bool	Only makes a difference if to_time=True. If True, will make coef_linear_out the same sign as coef_linear.	True

Returns:

Name	Type	Description
coef_linear_out	Union[float, ndarray, DataArray]	Output amplitude coefficient, same container type as inputs. Interpreted as \(\lambda_{\mathrm{mod}}\) if to_time=True; otherwise \(\lambda\).
coef_phase_out	Union[float, ndarray, DataArray]	Output phase quantity, same container type as inputs. Interpreted as \(2\pi f t_{\mathrm{ph}}\) (radians) if to_time=True; otherwise \(\lambda_{\mathrm{ph}}\).

Source code in isca_tools/thesis/surface_energy_budget.py

def phase_coef_conversion(coef_linear: Union[float, np.ndarray, xr.DataArray],
                          coef_phase: Union[float, np.ndarray, xr.DataArray],
                          to_time: bool = True,
                          pos_amp: bool = False,
                          neg_amp: bool = False,
                          take_linear_sign: bool = True
                          ) -> Tuple[Union[float, np.ndarray, xr.DataArray], Union[float, np.ndarray, xr.DataArray]]:
    """
    Method to convert between interpretation of phase empirical coefficients. If `to_time=True`, expect
    input to be $\lambda$ and $\lambda_{ph}$, and will return
    $\lambda_{mod}$, and $2\pi ft_{ph}$. If `to_time=False`, expect the opposite.

    Conversion performed according to:

    \\begin{align}
        \lambda &= \lambda_{\\text{mod}}\cos(2 \pi ft_{\\text{ph}})
        \\\\
        \lambda_{\\text{ph}} &= \lambda_{\\text{mod}}\sin(2 \pi ft_{\\text{ph}})
    \end{align}

    Args:
        coef_linear:
            Cosine/linear-amplitude coefficient associated with the in-phase component.
            If ``to_time=True`` this is interpreted as \(\lambda\); if ``to_time=False`` this is
            interpreted as \(\lambda_{\mathrm{mod}}\).
            Can be a scalar, ``numpy.ndarray``, or ``xarray.DataArray``.
        coef_phase:
            Phase-related coefficient.
            If ``to_time=True`` this is interpreted as \(\lambda_{\mathrm{ph}}\) (sine coefficient);
            if ``to_time=False`` this is interpreted as the phase angle \(2\pi f t_{\mathrm{ph}}\)
            (radians) used inside \(\cos(\cdot)\) / \(\sin(\cdot)\).
            Can be a scalar, ``numpy.ndarray``, or ``xarray.DataArray``.
        to_time:
            Direction of conversion.
            If ``True``, convert \((\lambda,\lambda_{\mathrm{ph}})\\rightarrow
            (\lambda_{\mathrm{mod}},2\pi f t_{\mathrm{ph}})\).
            If ``False``, convert \((\lambda_{\mathrm{mod}},2\pi f t_{\mathrm{ph}})
            \\rightarrow (\lambda,\lambda_{\mathrm{ph}})\).
        pos_amp:
            Only makes a difference if `to_time=True`.</br>
            If pos_amp=True: amp_coef >= 0, phase in ($[-pi, pi]$ (via atan2).
            If pos_amp=False: allow signed amp_coef and shift phase by +/-pi so that phase
            is constrained to $[-pi/2, pi/2]$ (minimize |phase|).
        neg_amp: Force amplitude to be negative.
        take_linear_sign:
            Only makes a difference if `to_time=True`.</br>
            If `True`, will make coef_linear_out the same sign as coef_linear.

    Returns:
        coef_linear_out:
            Output amplitude coefficient, same container type as inputs.
            Interpreted as \(\lambda_{\mathrm{mod}}\) if ``to_time=True``; otherwise \(\lambda\).
        coef_phase_out:
            Output phase quantity, same container type as inputs.
            Interpreted as \(2\pi f t_{\mathrm{ph}}\) (radians) if ``to_time=True``; otherwise
            \(\lambda_{\mathrm{ph}}\).
    """
    if to_time:
        coef_linear_out, coef_phase_out = fourier.coef_conversion(sin_coef=coef_phase, cos_coef=coef_linear,
                                                                  pos_amp=pos_amp, take_cos_sign=take_linear_sign,
                                                                  neg_amp=neg_amp)
        # if freq is not None:
        #     coef_phase_out = coef_phase_out / (2 * np.pi * freq)  # convert to seconds
    else:
        coef_linear_out = coef_linear * np.cos(coef_phase)
        coef_phase_out = coef_linear * np.sign(coef_phase)
    return coef_linear_out, coef_phase_out

swdn_from_temp_fourier(time, temp_fourier_amp, temp_fourier_phase, heat_capacity, lambda_const, lambda_time_lag=None, lambda_nl=None, day_seconds=86400, single_harmonic_nl=False)

OUTDATED FUNCTION - USED FOR get_temp_fourier but now use get_temp_fourier_numerical

This inverts the linearized surface energy budget to return an approximation for downward shortwave radiation at the surface, \(F(t)\), given a Fourier approximation for surface temperature, \(T(t) = \frac{T_0}{2} + \sum_{n=1}^{N} T_n\cos(2n\pi ft - \phi_n)\):

\[ F(t) \approx C\frac{\partial T}{\partial t} + \lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) + \sum_{j=2}^{j_{max}}\lambda_{nl_j}\left(T'^{j}(t) - \overline{T'^j}\right) \]

Parameters:

Name	Type	Description	Default
time	ndarray	float [n_time] Time in days (assumes periodic e.g. annual mean, so time = np.arange(360)).	required
temp_fourier_amp	ndarray	float [n_harmonics+1] The amplitude Fourier coefficients for surface temperature: \(T_n\).	required
temp_fourier_phase	ndarray	float [n_harmonics] The phase Fourier coefficients for surface temperature: \(\phi_n\).	required
heat_capacity	float	\(C\), the heat capacity of the surface in units of \(JK^{-1}m^{-2}\). Obtained from mixed layer depth of ocean using get_heat_capacity.	required
lambda_const	ndarray	float [n_lambda+1] The constants \(\lambda_i\) used in the approximation for \(\Gamma^{\uparrow} = LW^{\uparrow} - LW^{\downarrow} + LH^{\uparrow} + SH^{\uparrow}\). lambda_const[0] is \(\lambda_0\) and lambda_const[i] is \(\lambda_{i}\) for \(i>0\).	required
lambda_time_lag	Optional[ndarray]	float [n_lambda] The constants \(\Lambda_i\) used in the approximation for \(\Gamma^{\uparrow}\). lambda_time_lag[0] is \(\Lambda_1\) and lambda_time_lag[i] is \(\Lambda_{i+1}\) for \(i>0\).	None
lambda_nl	Optional[Union[float, ndarray]]	float [n_lambda_nl] The constants \(\lambda_{nl}\) used in the approximation for \(\Gamma^{\uparrow}\). [0] is squared contribution, [1] is cubed, ...	None
day_seconds	float	Duration of a day in seconds.	86400
single_harmonic_nl	bool	If True, the \(\lambda_{nl_j}T'^j\) terms in \(\Gamma^{\uparrow}\) will only use the first harmonic, not all harmonics.	False

Returns:

Type	Description
ndarray	float [n_time] Approximation for downward shortwave radiation at the surface. Units: \(Wm^{-2}\).

Source code in isca_tools/thesis/surface_energy_budget.py

def swdn_from_temp_fourier(time: np.ndarray, temp_fourier_amp: np.ndarray, temp_fourier_phase: np.ndarray,
                           heat_capacity: float, lambda_const: np.ndarray,
                           lambda_time_lag: Optional[np.ndarray] = None,
                           lambda_nl: Optional[Union[float, np.ndarray]] = None,
                           day_seconds: float = 86400, single_harmonic_nl: bool = False) -> np.ndarray:
    """
    OUTDATED FUNCTION - USED FOR `get_temp_fourier` but now use `get_temp_fourier_numerical`

    This inverts the linearized surface energy budget to return an approximation for downward shortwave radiation
    at the surface, $F(t)$, given a Fourier approximation for surface temperature,
    $T(t) = \\frac{T_0}{2} + \\sum_{n=1}^{N} T_n\\cos(2n\\pi ft - \\phi_n)$:

    $$
    F(t) \\approx C\\frac{\partial T}{\partial t} + \lambda_0 + \sum_{i=1}^{N_{\lambda}}\lambda_i T(t-\Lambda_i) +
    \sum_{j=2}^{j_{max}}\lambda_{nl_j}\\left(T'^{j}(t) - \overline{T'^j}\\right)
    $$


    Args:
        time: `float [n_time]`</br>
            Time in days (assumes periodic e.g. annual mean, so `time = np.arange(360)`).
        temp_fourier_amp: `float [n_harmonics+1]`</br>
            The amplitude Fourier coefficients for surface temperature: $T_n$.
        temp_fourier_phase: `float [n_harmonics]`</br>
            The phase Fourier coefficients for surface temperature: $\phi_n$.
        heat_capacity: $C$, the heat capacity of the surface in units of $JK^{-1}m^{-2}$.</br>
            Obtained from mixed layer depth of ocean using
            [`get_heat_capacity`](../utils/radiation.md#isca_tools.utils.radiation.get_heat_capacity).
        lambda_const: `float [n_lambda+1]`</br>
            The constants $\lambda_i$ used in the approximation for
            $\Gamma^{\\uparrow} = LW^{\\uparrow} - LW^{\\downarrow} + LH^{\\uparrow} + SH^{\\uparrow}$.</br>
            `lambda_const[0]` is $\lambda_0$ and `lambda_const[i]` is $\lambda_{i}$ for $i>0$.
        lambda_time_lag: `float [n_lambda]`</br>
            The constants $\Lambda_i$ used in the approximation for $\Gamma^{\\uparrow}$.</br>
            `lambda_time_lag[0]` is $\Lambda_1$ and `lambda_time_lag[i]` is $\Lambda_{i+1}$ for $i>0$.
        lambda_nl: `float [n_lambda_nl]`
            The constants $\lambda_{nl}$ used in the approximation for $\Gamma^{\\uparrow}$.
            `[0]` is squared contribution, `[1]` is cubed, ...
        day_seconds: Duration of a day in seconds.
        single_harmonic_nl: If `True`, the $\lambda_{nl_j}T'^j$ terms in $\Gamma^{\\uparrow}$ will only
            use the first harmonic, not all harmonics.

    Returns:
        `float [n_time]`</br>
            Approximation for downward shortwave radiation at the surface.
            Units: $Wm^{-2}$.
    """
    if lambda_nl is not None:
        #  deal with case when float given as lambda_nl
        if not hasattr(lambda_nl, "__len__"):
            lambda_nl = np.asarray([lambda_nl])
    n_year_days = len(time)
    temp_fourier = fourier.fourier_series(time, temp_fourier_amp, temp_fourier_phase)
    if single_harmonic_nl:
        temp_anom_nl = fourier.fourier_series(time, [0, temp_fourier_amp[1]],
                                              [temp_fourier_phase[0]])
        gamma = gamma_linear_approx(time, temp_fourier, lambda_const,
                                    lambda_time_lag, lambda_nl, temp_anom_nl)
    else:
        gamma = gamma_linear_approx(time, temp_fourier, lambda_const,
                                    lambda_time_lag, lambda_nl)
    dtemp_dt = fourier.fourier_series_deriv(time, temp_fourier_amp, temp_fourier_phase, day_seconds)
    return heat_capacity * dtemp_dt + gamma